Beverly Peng joined the Palmer lab in June 2021 as a new UCSD Bioengineering graduate specializing in Bioinformatics. She is from Sacramento but loves the San Diego weather more. Her hobbies include painting, video editing, and learning Japanese. She is very excited get started and can’t wait to make some memories.
Welcome, Beverly!
The article, “Dissecting indirect genetic effects from peers in laboratory mice” identifies genetic loci underlying associations between the phenotype of one mouse and genotypes of its cage mates (“indirect genetic effects”). It also clarifies the relationship between loci underlying classical (“direct”) genetic effects and indirect genetic effects. The experimental data collected in the Palmer lab by Dr. Amelie Baud, Dr. Amanda Barkley-Levenson and undergraduate student Nilgoun Farhadi between 2017 and 2020 were critical to validate a locus identified by GWAS of indirect genetic effects. Congrats!
On June 9th, 2021, Amanda Barkley-Levenson married James Anderson in a private ceremony at the San Diego Waterfront.
Congratulations, Amanda and James!
As the Palmer lab’s focus on bioinformatics has grown, Apurva has been appointed as the leader of the bioinformatics team, which is currently expanding from 3 to 4 full time members. She will continue to divide her time between publishing papers, continuing to develop the lab’s database and bioinformatics workflows, and working with collaborators and supervising the other members of the team. Congrats Apurva!
The Quantitative Genomics of Space Biology Workshop was held on Wednesday, May 26th, 2021. Speakers discussed recent studies and tools in quantitative genetics and its potential application to targeted flight studies and space biology. See the Agenda and Speakers here.
Dr. Abraham Palmer had presented as an expert in terrestrial Quantitative Genomics with Rodents.
This workshop was organized by NASA and the NASA GeneLab.
Dr. Abraham Palmer was featured as a Distinguished Investigator Award Speaker at the 2021 IBANGS Meeting on May 15th, 2021. He discussed his several publications in the journal, Genes, Brain and Behavior, emphasizing the science and the researchers who were involved. His presentation in the awards seminar can be seen here.
Congratulations, Dr. Palmer!
The article, “Integration of Evidence across Human and Model Organism Studies: A Meeting Report”, was accepted for publication in Genes, Brain, and Behavior. This article discusses a meeting attended by a diverse panel of scientists to examine better strategies for integrating genetic, epigenetic and epigenomics data in human and model organisms to obtain a greater mechanistic insight in substance use disorders. Dr, Abraham Palmer, Dr. Sandra Sanchez-Roige, and Apurva Chitre are co-authors along with several others. Congratulations!
Palmer lab member Ariana Page had a healthy baby recently. Congratulations, Ariana!
Dr. Abraham Palmer and Dr. Sandra Sanchez-Roige attended the National Institute of Mental Health (NIMH) Virtual Workshop: “Integrating Genomics with Dimensional and Transdiagnostic Approaches to Advance Mental Health Research” as panelists on April 6th, 2021. This workshop aims to discuss the current state of psychiatric genomics and new opportunities in dimensional/alternative phenotypes that align with the NIMH research. See details of the workshop here.
Dr. Palmer presented at the National Institute on Drug Abuse (NIDA) Center of Excellence in the Omics, Systems Genetics and the Addictome (OSGA) Webinar Series. His talk, “From GWAS to gene: What are the essential analyses and how do we bring them together using heterogeneous stock rats?”, describes the tools to analyze GWAS in HS rats and the automated pipeline that performs GWAS in HS rats. Furthermore, this talk explains the role of fine mapping of associated regions and the use of secondary analyses to prioritize genes in associated intervals.
